ISSN: 2168-9431
Single Cell Biology
Make the best use of Scientific Research and information from our 700+ peer reviewed, Open Access Journals that operates with the help of 50,000+ Editorial Board Members and esteemed reviewers and 1000+ Scientific associations in Medical, Clinical, Pharmaceutical, Engineering, Technology and Management Fields.
 
Meet Inspiring Speakers and Experts at our 3000+ Global Conferenceseries Events with over 600+ Conferences, 1200+ Symposiums and 1200+ Workshops on
Medical, Pharma, Engineering, Science, Technology and Business

T-DNA Tagging: A Promising Tool for Functional Genomics in Medicinal Plants

Yimian Ma, Shanfa Lu*
Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
Corresponding Author : Dr. Shanfa Lu
Institute of Medicinal Plant Development
Chinese Academy of Medical Sciences & Peking Union Medical College Beijing 100193, China
Tel: + 86-10-57833366
E-mail: sflu@implad.ac.cn
Received April 12, 2012; Accepted April 12, 2012; Published April 16, 2012
Citation: Ma Y, Lu S (2012) T-DNA Tagging: A Promising Tool for Functional Genomics in Medicinal Plants. J Sing Cel Genom Proteomics 1:e106. doi: 10.4172/2168-9431.1000e106
Copyright: © 2012 Ma Y, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Visit for more related articles at Single Cell Biology

Nowadays, herbal medicines have been widely used in health care and disease treatment and the share of herbal medicinal products in pharmaceutical market is increasing rapidly in many countries. One of the main resources of active pharmaceutical ingredients of herbal medicines is secondary metabolites, many of which are structurally complex and difficult to synthesize chemically. Thus, increasing the yield of some secondary metabolites through bioengineering approaches is highly desired. However, it is difficult to achieve at present because the genetic background of most medicinal plants is not clear and the genes involved in the biosynthesis of secondary metabolites are largely unknown. Intensive studies on functional genomics in medicinal plants seem to be a key for solving this problem.
The ever-growing research tools for plant functional genomics include large-scale sequencing of expression sequence tags (ESTs) or genomic DNA sequences, DNA chips, two-dimensional polyacrylamide gel electrophoresis (PAGE), mutagenesis-based methods, and so on [1]. EST sequencing is a rapid and relatively economic tool for transcriptome analysis. Through EST sequencing and subsequent computational analysis, some key enzyme genes involved in the biosynthesis of secondary metabolites have been identified and characterized in various medicinal plants, such as Glycyrrhiza uralensis [2], American ginseng [3], Ginkgo biloba [4], Digitalis purpurea [5], Panax notoginseng [6], Euphorbia fischeriana [7], Bupleurum chinense [8], Camptotheca acuminate [9], P. ginseng [10], Salvia miltiorrhiza [11,12], and Taxus cuspidate [13]. Whole-genome sequencing is the other effective tool for functional genomics. Whole-genome sequence analysis, combined with gene expression pattern analysis and systemic evolution analysis, has been successfully used to reveal forty genes involved in terpenoid biosynthesis in S. miltiorrhiza at a genome-wide level [14]. cDNA microarray, a hybridization-based technique, is an alternative way for analysis of plant genes. This method has been used for the identification of tanshinone biosynthesis-related genes in S. miltiorrhiza [15].
Genome-wide mutagenesis is a direct route to determine the function of a gene product in situ [16]. It is usually induced by radiation, chemicals, T-DNA or transposons, of which T-DNA and transposons are more attractive and have been used more often than radiation and chemicals in recent studies. This is because T-DNA and transposons can generate mutants tagged with known fragments. It makes the insertion sites in the genome be trackable, which is very convenient for gene identification. Transposons have been successfully used to generate mutant populations for various plant species, such as Arabidopsis and rice, and have been proved to be an effective tool for gene function verification [17]. However, the ‘jumping’ frequency of transposons is significantly varied among plant species, which results in the inability to control transposon activity in some plant species [18]. Additional disadvantages of transposon tagging include that the operative vectors of transposon tagging are limited to some plant species and the insertion of transposons in plant genome is not very stable. Therefore, T-DNA-mediated mutagenesis appears to be more suitable for generation of large-scale mutant populations of medicinal plants.
In the past years, the genome-wide T-DNA tagging strategy has been successfully employed in constructing mutant populations for various plant species, such as Arabidopsis, rice, maize, sorghum, soybean, tomato, et cetera, and has been proved to be powerful in elucidating gene functions through the generation of knockout mutants, activation-tagged transgenics, and promoter or enhancer trap lines [19,20]. Various web-based databases for T-DNA-tagged mutants have been constructed for two model plants, Arabidopsis and rice. The phenotypes of mutants and T-DNA insertion sites in the genome are available on the web. It has greatly accelerated systematic analysis of gene functions in Arabidopsis and rice. Thus, T-DNA tagging must be a very useful tool for the analysis of gene functions in medicinal plants. However, there is only a few reports on T-DNA-tagged mutants of medicinal plants and the mutant populations generated are small [21]. It could be due to the lack of whole-genome information and the unavailability of T-DNA-mediated transformation systems for most medicinal plant species. Other reasons probably include the costliness, time-consumingness and laboriousness in the generation of saturated mutant population and subsequent mutant screening and gene identification.
Although it is a herculean task, application of the T-DNA tagging technique in the studies on medicinal plant functional genomics is very attractive. This is particularly true with more and more genomes of medicinal plants decoded using the next-generation sequencing techniques and highly efficient transformation systems established for medicinal plants [21,22]. In addition, the development of some new methods, such as the rolling circle amplification-mediated hairpin RNA (RMHR) library construction technique, will greatly improve the efficiency of T-DNA tagging [23]. Thus, application of the T-DNA tagging technique in medicinal plant functional genomics is also practicable. Since one can expect tremendous outcomes once largescale mutant populations are generated for medicinal plants and valuable information of gene functions are obtained, it is reasonable to believe that T-DNA tagging is a promising tool for functional genomics in medicinal plants.
Acknowledgements
This work was supported by grants from the Natural Science Foundation of China (grant number 81102727 to Y.M.), the Major Scientific and Technological Special Project for Significant New Drugs Creation (grant number 2012ZX09301002- 001-030 to S.L.), the Research Fund for the Doctoral Program of Higher Education
References
Select your language of interest to view the total content in your interested language
Post your comment

Share This Article

Relevant Topics

Recommended Conferences

Article Usage

  • Total views: 3736
  • [From(publication date):
    April-2012 - Sep 28, 2016]
  • Breakdown by view type
  • HTML page views : 2
  • PDF downloads :3734
 
 

Post your comment

captcha   Reload  Can't read the image? click here to refresh

OMICS International Journals
 
Make the best use of Scientific Research and information from our 700 + peer reviewed, Open Access Journals
 
 
OMICS International Conferences 2016-17
 
Meet Inspiring Speakers and Experts at our 3000+ Global Annual Meetings
 
 

Contact Us

Agri, Food, Aqua and Veterinary Science Journals

Dr. Krish

agrifoodaquavet@omicsinc.com

1-702-714-7001 Extn: 9040

Clinical and Biochemistry Journals

Datta A

clinical_biochem@omicsinc.com

1-702-714-7001Extn: 9037

Business & Management Journals

Ronald

business@omicsinc.com

1-702-714-7001Extn: 9042

Chemical Engineering and Chemistry Journals

Gabriel Shaw

chemicaleng_chemistry@omicsinc.com

1-702-714-7001 Extn: 9040

Earth & Environmental Sciences

Katie Wilson

environmentalsci@omicsinc.com

1-702-714-7001Extn: 9042

Engineering Journals

James Franklin

engineering@omicsinc.com

1-702-714-7001Extn: 9042

General Science and Health care Journals

Andrea Jason

generalsci_healthcare@omicsinc.com

1-702-714-7001Extn: 9043

Genetics and Molecular Biology Journals

Anna Melissa

genetics_molbio@omicsinc.com

1-702-714-7001 Extn: 9006

Immunology & Microbiology Journals

David Gorantl

immuno_microbio@omicsinc.com

1-702-714-7001Extn: 9014

Informatics Journals

Stephanie Skinner

omics@omicsinc.com

1-702-714-7001Extn: 9039

Material Sciences Journals

Rachle Green

materialsci@omicsinc.com

1-702-714-7001Extn: 9039

Mathematics and Physics Journals

Jim Willison

mathematics_physics@omicsinc.com

1-702-714-7001 Extn: 9042

Medical Journals

Nimmi Anna

medical@omicsinc.com

1-702-714-7001 Extn: 9038

Neuroscience & Psychology Journals

Nathan T

neuro_psychology@omicsinc.com

1-702-714-7001Extn: 9041

Pharmaceutical Sciences Journals

John Behannon

pharma@omicsinc.com

1-702-714-7001Extn: 9007

Social & Political Science Journals

Steve Harry

social_politicalsci@omicsinc.com

1-702-714-7001 Extn: 9042

 
© 2008-2016 OMICS International - Open Access Publisher. Best viewed in Mozilla Firefox | Google Chrome | Above IE 7.0 version